HL_4WF1_159

3D structure

PDB id

4WF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to negamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.09 Å

Loop

Sequence

GUCAC

Length

5 nucleotides

Bulged bases

4WF1|1|DA|C|885

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WF1_159 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3254

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

4WF1|1|DA|G|883
4WF1|1|DA|U|884
4WF1|1|DA|C|885
4WF1|1|DA|A|892
4WF1|1|DA|C|893

Current chains

Chain DA

23S rRNA

Nearby chains