HL_4WF1_175

3D structure

PDB id

4WF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to negamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.09 Å

Loop

Sequence

UAGAGAAUA

Length

9 nucleotides

Bulged bases

4WF1|1|DA|A|1634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WF1_175 not in the Motif Atlas

Homologous match to HL_4WF9_039

Geometric discrepancy: 0.2969

The information below is about HL_4WF9_039

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

4WF1|1|DA|U|1629
4WF1|1|DA|A|1630
4WF1|1|DA|G|1631
4WF1|1|DA|A|1632
4WF1|1|DA|G|1633
4WF1|1|DA|A|1634
4WF1|1|DA|A|1635
4WF1|1|DA|U|1636
4WF1|1|DA|A|1637

Current chains

Chain DA

23S rRNA

Nearby chains