HL_4WF1_210

3D structure

PDB id

4WF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to negamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.09 Å

Loop

Sequence

CCUCGCG

Length

7 nucleotides

Bulged bases

4WF1|1|BA|U|1729, 4WF1|1|BA|C|1732

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WF1_210 not in the Motif Atlas

Homologous match to HL_5J7L_214

Geometric discrepancy: 0.1883

The information below is about HL_5J7L_214

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

4WF1|1|BA|C|1727
4WF1|1|BA|C|1728
4WF1|1|BA|U|1729
4WF1|1|BA|C|1730
4WF1|1|BA|G|1731
4WF1|1|BA|C|1732
4WF1|1|BA|G|1733

Current chains

Chain BA

23S rRNA

Nearby chains