Loop HL_4WF1

3D structure

PDB id: 4WF1 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Crystal structure of the E. coli ribosome bound to negamycin.
Experimental method: X-RAY DIFFRACTION
Resolution: 3.09 Å

Loop

Sequence: GGAGGCUUUGAAGUGUGGACGCCAGUCUGCAUGGAGCCGACCUUGAAAUAC
Length: 51 nucleotides
Bulged bases: 4WF1|1|BA|U|2132, 4WF1|1|BA|C|2145, 4WF1|1|BA|C|2164, 4WF1|1|BA|U|2172
QA status: Unknown status

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4WF1|1|BA|G|2124
4WF1|1|BA|G|2125
4WF1|1|BA|A|2126
4WF1|1|BA|G|2127
4WF1|1|BA|G|2128
4WF1|1|BA|C|2129
4WF1|1|BA|U|2130
4WF1|1|BA|U|2131
4WF1|1|BA|U|2132
4WF1|1|BA|G|2133
4WF1|1|BA|A|2134
4WF1|1|BA|A|2135
4WF1|1|BA|G|2136
4WF1|1|BA|U|2137
4WF1|1|BA|G|2138
4WF1|1|BA|U|2139
4WF1|1|BA|G|2140
4WF1|1|BA|G|2141
4WF1|1|BA|A|2142
4WF1|1|BA|C|2143
4WF1|1|BA|G|2144
4WF1|1|BA|C|2145
4WF1|1|BA|C|2146
4WF1|1|BA|A|2147
4WF1|1|BA|G|2148
4WF1|1|BA|U|2149
4WF1|1|BA|C|2150
4WF1|1|BA|U|2151
4WF1|1|BA|G|2152
4WF1|1|BA|C|2153
4WF1|1|BA|A|2154
4WF1|1|BA|U|2155
4WF1|1|BA|G|2156
4WF1|1|BA|G|2157
4WF1|1|BA|A|2158
4WF1|1|BA|G|2159
4WF1|1|BA|C|2160
4WF1|1|BA|C|2161
4WF1|1|BA|G|2162
4WF1|1|BA|A|2163
4WF1|1|BA|C|2164
4WF1|1|BA|C|2165
4WF1|1|BA|U|2166
4WF1|1|BA|U|2167
4WF1|1|BA|G|2168
4WF1|1|BA|A|2169
4WF1|1|BA|A|2170
4WF1|1|BA|A|2171
4WF1|1|BA|U|2172
4WF1|1|BA|A|2173
4WF1|1|BA|C|2174

Current chains

Chain BA: 23S rRNA

Nearby chains

Chain AA: Small subunit ribosomal RNA; SSU rRNA
Chain AK: 30S ribosomal protein S11
Chain B5: 50S ribosomal protein L1
Chain CA: Small subunit ribosomal RNA; SSU rRNA

HL_4WF1_211