HL_4WF1_217

3D structure

PDB id

4WF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to negamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.09 Å

Loop

Sequence

UUAACCGAAUAGGGGAG

Length

17 nucleotides

Bulged bases

4WF1|1|DA|A|613, 4WF1|1|DA|U|615

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4WF1|1|DA|U|606
4WF1|1|DA|U|607
4WF1|1|DA|A|608
4WF1|1|DA|A|609
4WF1|1|DA|C|610
4WF1|1|DA|C|611
4WF1|1|DA|G|612
4WF1|1|DA|A|613
4WF1|1|DA|A|614
4WF1|1|DA|U|615
4WF1|1|DA|A|616
4WF1|1|DA|G|617
4WF1|1|DA|G|618
4WF1|1|DA|G|619
4WF1|1|DA|G|620
4WF1|1|DA|A|621
4WF1|1|DA|G|622

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DE

50S ribosomal protein L4

Chain DL

50S ribosomal protein L15