3D structure

PDB id
4WF9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with telithromycin
Experimental method
X-RAY DIFFRACTION
Resolution
3.43 Å

Loop

Sequence
UUUUGUAGAA
Length
10 nucleotides
Bulged bases
4WF9|1|X|A|617
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
T-loop with 2 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_43993.1
Basepair signature
cWW-tWH-F-F-F-F-F
Number of instances in this motif group
141

Unit IDs

4WF9|1|X|U|609
4WF9|1|X|U|610
4WF9|1|X|U|611
4WF9|1|X|U|612
4WF9|1|X|G|613
4WF9|1|X|U|614
4WF9|1|X|A|615
4WF9|1|X|G|616
4WF9|1|X|A|617
4WF9|1|X|A|618

Current chains

Chain X
23S ribosomal RNA

Nearby chains

Chain B
50S ribosomal protein L3
Chain I
50S ribosomal protein L15
Chain O
50S ribosomal protein L21
Chain Z
50S ribosomal protein L32

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.1207 s