HL_4WFA_005

3D structure

PDB id

4WFA (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolid

Experimental method

X-RAY DIFFRACTION

Resolution

3.39 Å

Loop

Sequence

UGUAUACAUAGCA

Length

13 nucleotides

Bulged bases

4WFA|1|X|A|164

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WFA_005 not in the Motif Atlas

Geometric match to HL_4WF9_011

Geometric discrepancy: 0.2036

The information below is about HL_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

4WFA|1|X|U|157
4WFA|1|X|G|158
4WFA|1|X|U|159
4WFA|1|X|A|162
4WFA|1|X|U|163
4WFA|1|X|A|164
4WFA|1|X|C|165
4WFA|1|X|A|166
4WFA|1|X|U|167
4WFA|1|X|A|168
4WFA|1|X|G|169
4WFA|1|X|C|170
4WFA|1|X|A|171

Current chains

Chain X

23S rRNA

Nearby chains

Chain U

50S ribosomal protein L28