HL_4WFA_012

3D structure

PDB id

4WFA (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolid

Experimental method

X-RAY DIFFRACTION

Resolution

3.39 Å

Loop

Sequence

GUAAUAAUC

Length

9 nucleotides

Bulged bases

4WFA|1|X|A|372, 4WFA|1|X|A|373, 4WFA|1|X|U|374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WFA_012 not in the Motif Atlas

Homologous match to HL_4WF9_012

Geometric discrepancy: 0.0925

The information below is about HL_4WF9_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.3

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

15

Unit IDs

4WFA|1|X|G|370
4WFA|1|X|U|371
4WFA|1|X|A|372
4WFA|1|X|A|373
4WFA|1|X|U|374
4WFA|1|X|A|375
4WFA|1|X|A|376
4WFA|1|X|U|377
4WFA|1|X|C|378

Current chains

Chain X

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain R

50S ribosomal protein L24