HL_4WFA_054

3D structure

PDB id

4WFA (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolid

Experimental method

X-RAY DIFFRACTION

Resolution

3.39 Å

Loop

Sequence

CCUACAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WFA_054 not in the Motif Atlas

Homologous match to HL_4WF9_053

Geometric discrepancy: 0.0879

The information below is about HL_4WF9_053

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

4WFA|1|X|C|2382
4WFA|1|X|C|2383
4WFA|1|X|U|2384
4WFA|1|X|A|2385
4WFA|1|X|C|2386
4WFA|1|X|A|2387
4WFA|1|X|A|2388
4WFA|1|X|G|2389

Current chains

Chain X

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L35

Chain I

50S ribosomal protein L15

Chain T

50S ribosomal protein L27