HL_4WFA_071

3D structure

PDB id

4WFA (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolid

Experimental method

X-RAY DIFFRACTION

Resolution

3.39 Å

Loop

Sequence

GUUGGAAAU

Length

9 nucleotides

Bulged bases

4WFA|1|X|A|2338

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WFA_071 not in the Motif Atlas

Homologous match to HL_7A0S_076

Geometric discrepancy: 0.4314

The information below is about HL_7A0S_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02452.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

8

Unit IDs

4WFA|1|X|G|2331
4WFA|1|X|U|2332
4WFA|1|X|U|2333
4WFA|1|X|G|2334
4WFA|1|X|G|2335
4WFA|1|X|A|2336
4WFA|1|X|A|2337
4WFA|1|X|A|2338
4WFA|1|X|U|2339

Current chains

Chain X

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L5