HL_4WFB_033

3D structure

PDB id

4WFB (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205

Experimental method

X-RAY DIFFRACTION

Resolution

3.43 Å

Loop

Sequence

GCUCGUC

Length

7 nucleotides

Bulged bases

4WFB|1|X|C|1362, 4WFB|1|X|U|1366

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WFB_033 not in the Motif Atlas

Homologous match to HL_4WF9_033

Geometric discrepancy: 0.0763

The information below is about HL_4WF9_033

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

4WFB|1|X|G|1361
4WFB|1|X|C|1362
4WFB|1|X|U|1363
4WFB|1|X|C|1364
4WFB|1|X|G|1365
4WFB|1|X|U|1366
4WFB|1|X|C|1367

Current chains

Chain X

23S rRNA

Nearby chains

Chain K

50S ribosomal protein L17

Chain P

50S ribosomal protein L22