HL_4WFB_039

3D structure

PDB id

4WFB (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205

Experimental method

X-RAY DIFFRACTION

Resolution

3.43 Å

Loop

Sequence

AUGAGAAUU

Length

9 nucleotides

Bulged bases

4WFB|1|X|A|1678

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WFB_039 not in the Motif Atlas

Homologous match to HL_4WF9_039

Geometric discrepancy: 0.0743

The information below is about HL_4WF9_039

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

4WFB|1|X|A|1673
4WFB|1|X|U|1674
4WFB|1|X|G|1675
4WFB|1|X|A|1676
4WFB|1|X|G|1677
4WFB|1|X|A|1678
4WFB|1|X|A|1679
4WFB|1|X|U|1680
4WFB|1|X|U|1681

Current chains

Chain X

23S rRNA

Nearby chains