HL_4WFB_048

3D structure

PDB id

4WFB (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205

Experimental method

X-RAY DIFFRACTION

Resolution

3.43 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

4WFB|1|X|A|2057, 4WFB|1|X|A|2058, 4WFB|1|X|G|2059

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WFB_048 not in the Motif Atlas

Homologous match to HL_4WF9_047

Geometric discrepancy: 0.0802

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

10

Unit IDs

4WFB|1|X|G|2054
4WFB|1|X|U|2055
4WFB|1|X|G|2056
4WFB|1|X|A|2057
4WFB|1|X|A|2058
4WFB|1|X|G|2059
4WFB|1|X|A|2060
4WFB|1|X|U|2061
4WFB|1|X|G|2062
4WFB|1|X|C|2063

Current chains

Chain X

23S rRNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain O

50S ribosomal protein L21

Chain Z

50S ribosomal protein L32