HL_4WFB_054

3D structure

PDB id

4WFB (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205

Experimental method

X-RAY DIFFRACTION

Resolution

3.43 Å

Loop

Sequence

UGUAAAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WFB_054 not in the Motif Atlas

Homologous match to HL_4WF9_052

Geometric discrepancy: 0.0901

The information below is about HL_4WF9_052

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

29

Unit IDs

4WFB|1|X|U|2351
4WFB|1|X|G|2352
4WFB|1|X|U|2353
4WFB|1|X|A|2354
4WFB|1|X|A|2355
4WFB|1|X|A|2356
4WFB|1|X|G|2357
4WFB|1|X|G|2358

Current chains

Chain X

23S rRNA

Nearby chains

Chain J

50S ribosomal protein L16

Chain T

50S ribosomal protein L27