HL_4WJ4_006

3D structure

PDB id

4WJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of non-discriminating aspartyl-tRNA synthetase from Pseudomonas aeruginosa complexed with tRNA(Asn) and aspartic acid

Experimental method

X-RAY DIFFRACTION

Resolution

3.29 Å

Loop

Sequence

GUUCGAGUC

Length

9 nucleotides

Bulged bases (A, C, G, U)

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33239.15

Basepair signature

cWW-R-R-tWH-R-R-R

Number of instances in this motif group

108

Unit IDs

4WJ4|1|B|G|53||||5_455
4WJ4|1|B|U|54||||5_455
4WJ4|1|B|U|55||||5_455
4WJ4|1|B|C|56||||5_455
4WJ4|1|B|G|57||||5_455
4WJ4|1|B|A|58||||5_455
4WJ4|1|B|G|59||||5_455
4WJ4|1|B|U|60||||5_455
4WJ4|1|B|C|61||||5_455

Current chains

Chain B

76mer-tRNA

Nearby chains