HL_4WOI_005

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCUUCGGG

Length

8 nucleotides

Bulged bases

4WOI|1|AA|U|209

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WOI_005 not in the Motif Atlas

Geometric match to HL_7KI3_001

Geometric discrepancy: 0.371

The information below is about HL_7KI3_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

4WOI|1|AA|C|206
4WOI|1|AA|C|207
4WOI|1|AA|U|208
4WOI|1|AA|U|209
4WOI|1|AA|C|210
4WOI|1|AA|G|211
4WOI|1|AA|G|212
4WOI|1|AA|G|213

Current chains

Chain AA

16S ribosomal RNA

Nearby chains