HL_4WOI_041
3D structure
- PDB id
- 4WOI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GAAACAUC
- Length
- 8 nucleotides
- Bulged bases
- 4WOI|1|BA|A|196
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4WOI_041 not in the Motif Atlas
- Geometric match to HL_5J7L_139
- Geometric discrepancy: 0.0919
- The information below is about HL_5J7L_139
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_30068.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
4WOI|1|BA|G|194
4WOI|1|BA|A|195
4WOI|1|BA|A|196
4WOI|1|BA|A|197
4WOI|1|BA|C|198
4WOI|1|BA|A|199
4WOI|1|BA|U|200
4WOI|1|BA|C|201
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain AX
- Transfer RNA; tRNA
- Chain BL
- 50S ribosomal protein L15
- Chain BX
- 50S ribosomal protein L28
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