HL_4WOI_048

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

4WOI|1|BA|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WOI_048 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.0828

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

4WOI|1|BA|G|410
4WOI|1|BA|G|411
4WOI|1|BA|A|412
4WOI|1|BA|C|413
4WOI|1|BA|C|414
4WOI|1|BA|A|415
4WOI|1|BA|U|416
4WOI|1|BA|C|417

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BL

50S ribosomal protein L15