HL_4WOI_067

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUUAAUC

Length

7 nucleotides

Bulged bases

4WOI|1|BA|U|1325, 4WOI|1|BA|U|1329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WOI_067 not in the Motif Atlas

Homologous match to HL_5J7L_166

Geometric discrepancy: 0.0771

The information below is about HL_5J7L_166

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

4WOI|1|BA|G|1324
4WOI|1|BA|U|1325
4WOI|1|BA|U|1326
4WOI|1|BA|A|1327
4WOI|1|BA|A|1328
4WOI|1|BA|U|1329
4WOI|1|BA|C|1330

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BN

50S ribosomal protein L17

Chain BS

50S ribosomal protein L22