HL_4WOI_071

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GCAAAUC

Length

7 nucleotides

Bulged bases

4WOI|1|BA|C|1493, 4WOI|1|BA|U|1497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WOI_071 not in the Motif Atlas

Homologous match to HL_5J7L_170

Geometric discrepancy: 0.1068

The information below is about HL_5J7L_170

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

4WOI|1|BA|G|1492
4WOI|1|BA|C|1493
4WOI|1|BA|A|1494
4WOI|1|BA|A|1495
4WOI|1|BA|A|1496
4WOI|1|BA|U|1497
4WOI|1|BA|C|1498

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L2