HL_4WOI_077

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UCCCUCGCGGA

Length

11 nucleotides

Bulged bases

4WOI|1|BA|U|1729, 4WOI|1|BA|C|1732

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WOI_077 not in the Motif Atlas

Homologous match to HL_7A0S_043

Geometric discrepancy: 0.3247

The information below is about HL_7A0S_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4WOI|1|BA|U|1725
4WOI|1|BA|C|1726
4WOI|1|BA|C|1727
4WOI|1|BA|C|1728
4WOI|1|BA|U|1729
4WOI|1|BA|C|1730
4WOI|1|BA|G|1731
4WOI|1|BA|C|1732
4WOI|1|BA|G|1733
4WOI|1|BA|G|1734
4WOI|1|BA|A|1735

Current chains

Chain BA

23S ribosomal RNA

Nearby chains