HL_4WOI_083

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

4WOI|1|BA|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WOI_083 not in the Motif Atlas

Homologous match to HL_7RQB_049

Geometric discrepancy: 0.0649

The information below is about HL_7RQB_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51824.1

Basepair signature

cWW-F-F-tSH-F-F

Number of instances in this motif group

8

Unit IDs

4WOI|1|BA|G|1949
4WOI|1|BA|G|1950
4WOI|1|BA|U|1951
4WOI|1|BA|A|1952
4WOI|1|BA|A|1953
4WOI|1|BA|G|1954
4WOI|1|BA|U|1955
4WOI|1|BA|U|1956
4WOI|1|BA|C|1957

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BK

50S ribosomal protein L14