HL_4WOI_087

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

4WOI|1|BA|G|2250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WOI_087 not in the Motif Atlas

Homologous match to HL_5J7L_186

Geometric discrepancy: 0.1281

The information below is about HL_5J7L_186

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

4WOI|1|BA|C|2248
4WOI|1|BA|U|2249
4WOI|1|BA|G|2250
4WOI|1|BA|G|2251
4WOI|1|BA|G|2252
4WOI|1|BA|G|2253
4WOI|1|BA|C|2254
4WOI|1|BA|G|2255
4WOI|1|BA|G|2256

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AV

Ribosome-recycling factor

Chain BM

50S ribosomal protein L16

Chain BW

50S ribosomal protein L27