HL_4WOI_123

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGAAUAG

Length

7 nucleotides

Bulged bases

4WOI|1|CA|A|613, 4WOI|1|CA|U|615

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WOI_123 not in the Motif Atlas

Homologous match to HL_5J7L_151

Geometric discrepancy: 0.3858

The information below is about HL_5J7L_151

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

3

Unit IDs

4WOI|1|CA|C|611
4WOI|1|CA|G|612
4WOI|1|CA|A|613
4WOI|1|CA|A|614
4WOI|1|CA|U|615
4WOI|1|CA|A|616
4WOI|1|CA|G|617

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain CE

50S ribosomal protein L4