HL_4WOI_126

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGUAACAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WOI_126 not in the Motif Atlas

Homologous match to HL_5J7L_154

Geometric discrepancy: 0.0874

The information below is about HL_5J7L_154

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

4WOI|1|CA|G|712
4WOI|1|CA|G|713
4WOI|1|CA|U|714
4WOI|1|CA|A|715
4WOI|1|CA|A|716
4WOI|1|CA|C|717
4WOI|1|CA|A|718
4WOI|1|CA|C|719

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain DA

Small subunit ribosomal RNA; SSU rRNA

Chain DO

30S ribosomal protein S15