HL_4WOI_128

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGAAAGG

Length

7 nucleotides

Bulged bases

4WOI|1|CA|A|781, 4WOI|1|CA|G|784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WOI_128 not in the Motif Atlas

Homologous match to HL_5J7L_156

Geometric discrepancy: 0.1646

The information below is about HL_5J7L_156

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87954.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

7

Unit IDs

4WOI|1|CA|U|779
4WOI|1|CA|G|780
4WOI|1|CA|A|781
4WOI|1|CA|A|782
4WOI|1|CA|A|783
4WOI|1|CA|G|784
4WOI|1|CA|G|785

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain CC

50S ribosomal protein L2