HL_4WOI_130

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGGGGUCACUUACC

Length

14 nucleotides

Bulged bases

4WOI|1|CA|C|885, 4WOI|1|CA|A|892, 4WOI|1|CA|A|896

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4WOI|1|CA|G|879
4WOI|1|CA|G|880
4WOI|1|CA|G|881
4WOI|1|CA|G|882
4WOI|1|CA|G|883
4WOI|1|CA|U|884
4WOI|1|CA|C|885
4WOI|1|CA|A|892
4WOI|1|CA|C|893
4WOI|1|CA|U|894
4WOI|1|CA|U|895
4WOI|1|CA|A|896
4WOI|1|CA|C|897
4WOI|1|CA|C|898

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain CM

50S ribosomal protein L16

Chain DM

30S ribosomal protein S13

Chain DS

30S ribosomal protein S19