HL_4WOI_133

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGCUUAGAAGCAGCC

Length

15 nucleotides

Bulged bases

4WOI|1|CA|U|1065, 4WOI|1|CA|A|1067, 4WOI|1|CA|A|1070

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4WOI|1|CA|G|1062
4WOI|1|CA|G|1063
4WOI|1|CA|C|1064
4WOI|1|CA|U|1065
4WOI|1|CA|U|1066
4WOI|1|CA|A|1067
4WOI|1|CA|G|1068
4WOI|1|CA|A|1069
4WOI|1|CA|A|1070
4WOI|1|CA|G|1071
4WOI|1|CA|C|1072
4WOI|1|CA|A|1073
4WOI|1|CA|G|1074
4WOI|1|CA|C|1075
4WOI|1|CA|C|1076

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain CI

50S ribosomal protein L11

Chain CM

50S ribosomal protein L16