HL_4WOI_161

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGCAAUGG

Length

8 nucleotides

Bulged bases

4WOI|1|CA|G|2325, 4WOI|1|CA|C|2326

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WOI_161 not in the Motif Atlas

Homologous match to HL_4WF9_052

Geometric discrepancy: 0.1517

The information below is about HL_4WF9_052

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

4WOI|1|CA|U|2324
4WOI|1|CA|G|2325
4WOI|1|CA|C|2326
4WOI|1|CA|A|2327
4WOI|1|CA|A|2328
4WOI|1|CA|U|2329
4WOI|1|CA|G|2330
4WOI|1|CA|G|2331

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain CF

50S ribosomal protein L5

Chain CW

50S ribosomal protein L27

Chain DW

Transfer RNA; tRNA