HL_4WOI_175

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAUGCCG

Length

7 nucleotides

Bulged bases

4WOI|1|CB|G|3041

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WOI_175 not in the Motif Atlas

Homologous match to HL_5J7L_203

Geometric discrepancy: 0.1623

The information below is about HL_5J7L_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47787.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

10

Unit IDs

4WOI|1|CB|C|3038
4WOI|1|CB|A|3039
4WOI|1|CB|U|3040
4WOI|1|CB|G|3041
4WOI|1|CB|C|3042
4WOI|1|CB|C|3043
4WOI|1|CB|G|3044

Current chains

Chain CB

5S ribosomal RNA

Nearby chains

Chain CA

Large subunit ribosomal RNA; LSU rRNA

Chain CF

50S ribosomal protein L5

Chain CO

50S ribosomal protein L18