HL_4WOI_188

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

4WOI|1|DA|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WOI_188 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.1654

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

4WOI|1|DA|G|462
4WOI|1|DA|U|463
4WOI|1|DA|U|464
4WOI|1|DA|A|465
4WOI|1|DA|A|466
4WOI|1|DA|U|467
4WOI|1|DA|A|468
4WOI|1|DA|C|469
4WOI|1|DA|C|470

Current chains

Chain DA

16S ribosomal RNA

Nearby chains