HL_4WOI_194

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCCUUGAGG

Length

9 nucleotides

Bulged bases

4WOI|1|DA|U|842, 4WOI|1|DA|A|845

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WOI_194 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3448

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

4WOI|1|DA|C|839
4WOI|1|DA|C|840
4WOI|1|DA|C|841
4WOI|1|DA|U|842
4WOI|1|DA|U|843
4WOI|1|DA|G|844
4WOI|1|DA|A|845
4WOI|1|DA|G|846
4WOI|1|DA|G|847

Current chains

Chain DA

16S ribosomal RNA

Nearby chains

Chain DR

30S ribosomal protein S18