HL_4WOI_198

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAGAGAUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WOI_198 not in the Motif Atlas

Homologous match to HL_6CZR_093

Geometric discrepancy: 0.3695

The information below is about HL_6CZR_093

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4WOI|1|DA|C|1011
4WOI|1|DA|A|1012
4WOI|1|DA|G|1013
4WOI|1|DA|A|1014
4WOI|1|DA|G|1015
4WOI|1|DA|A|1016
4WOI|1|DA|U|1017
4WOI|1|DA|G|1018

Current chains

Chain DA

16S ribosomal RNA

Nearby chains

Chain DN

30S ribosomal protein S14

Chain DS

30S ribosomal protein S19