HL_4WOI_205

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUGCAACUCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WOI_205 not in the Motif Atlas

Homologous match to HL_4LFB_029

Geometric discrepancy: 0.1251

The information below is about HL_4LFB_029

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_02887.3

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4WOI|1|DA|C|1314
4WOI|1|DA|U|1315
4WOI|1|DA|G|1316
4WOI|1|DA|C|1317
4WOI|1|DA|A|1318
4WOI|1|DA|A|1319
4WOI|1|DA|C|1320
4WOI|1|DA|U|1321
4WOI|1|DA|C|1322
4WOI|1|DA|G|1323

Current chains

Chain DA

16S ribosomal RNA

Nearby chains

Chain DM

30S ribosomal protein S13

Chain DN

30S ribosomal protein S14

Chain DS

30S ribosomal protein S19