HL_4WOI_206

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAUCAGAAUGC

Length

11 nucleotides

Bulged bases

4WOI|1|DA|U|1364

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WOI_206 not in the Motif Atlas

Homologous match to HL_4LFB_030

Geometric discrepancy: 0.277

The information below is about HL_4LFB_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06226.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4WOI|1|DA|G|1356
4WOI|1|DA|A|1357
4WOI|1|DA|U|1358
4WOI|1|DA|C|1359
4WOI|1|DA|A|1360
4WOI|1|DA|G|1361
4WOI|1|DA|A|1362
4WOI|1|DA|A|1363
4WOI|1|DA|U|1364
4WOI|1|DA|G|1365
4WOI|1|DA|C|1366

Current chains

Chain DA

16S ribosomal RNA

Nearby chains

Chain DI

30S ribosomal protein S9

Chain DJ

30S ribosomal protein S10

Chain DN

30S ribosomal protein S14