HL_4WOI_214

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GCGCAAGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WOI_214 not in the Motif Atlas

Homologous match to HL_4WF9_045

Geometric discrepancy: 0.2646

The information below is about HL_4WF9_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4WOI|1|BA|G|1867
4WOI|1|BA|C|1868
4WOI|1|BA|G|1869
4WOI|1|BA|C|1870
4WOI|1|BA|A|1871
4WOI|1|BA|A|1872
4WOI|1|BA|G|1873
4WOI|1|BA|C|1874

Current chains

Chain BA

23S ribosomal RNA

Nearby chains