HL_4WOI_215

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGAGGCUUUGAAGUGUGGACGCCAGUCUGCAUGGAGCCGACCUUGAAAUAC

Length

51 nucleotides

Bulged bases

4WOI|1|BA|U|2132, 4WOI|1|BA|A|2135, 4WOI|1|BA|G|2138, 4WOI|1|BA|C|2146, 4WOI|1|BA|A|2158, 4WOI|1|BA|C|2160, 4WOI|1|BA|C|2164, 4WOI|1|BA|C|2165, 4WOI|1|BA|U|2167, 4WOI|1|BA|G|2168, 4WOI|1|BA|A|2169, 4WOI|1|BA|U|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4WOI|1|BA|G|2124
4WOI|1|BA|G|2125
4WOI|1|BA|A|2126
4WOI|1|BA|G|2127
4WOI|1|BA|G|2128
4WOI|1|BA|C|2129
4WOI|1|BA|U|2130
4WOI|1|BA|U|2131
4WOI|1|BA|U|2132
4WOI|1|BA|G|2133
4WOI|1|BA|A|2134
4WOI|1|BA|A|2135
4WOI|1|BA|G|2136
4WOI|1|BA|U|2137
4WOI|1|BA|G|2138
4WOI|1|BA|U|2139
4WOI|1|BA|G|2140
4WOI|1|BA|G|2141
4WOI|1|BA|A|2142
4WOI|1|BA|C|2143
4WOI|1|BA|G|2144
4WOI|1|BA|C|2145
4WOI|1|BA|C|2146
4WOI|1|BA|A|2147
4WOI|1|BA|G|2148
4WOI|1|BA|U|2149
4WOI|1|BA|C|2150
4WOI|1|BA|U|2151
4WOI|1|BA|G|2152
4WOI|1|BA|C|2153
4WOI|1|BA|A|2154
4WOI|1|BA|U|2155
4WOI|1|BA|G|2156
4WOI|1|BA|G|2157
4WOI|1|BA|A|2158
4WOI|1|BA|G|2159
4WOI|1|BA|C|2160
4WOI|1|BA|C|2161
4WOI|1|BA|G|2162
4WOI|1|BA|A|2163
4WOI|1|BA|C|2164
4WOI|1|BA|C|2165
4WOI|1|BA|U|2166
4WOI|1|BA|U|2167
4WOI|1|BA|G|2168
4WOI|1|BA|A|2169
4WOI|1|BA|A|2170
4WOI|1|BA|A|2171
4WOI|1|BA|U|2172
4WOI|1|BA|A|2173
4WOI|1|BA|C|2174

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AG

30S ribosomal protein S7

Chain AK

30S ribosomal protein S11

Chain B5

50S ribosomal protein L1

Chain DA

Small subunit ribosomal RNA; SSU rRNA