HL_4WOI_219

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GCGCAAGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WOI_219 not in the Motif Atlas

Geometric match to HL_3RG5_006

Geometric discrepancy: 0.2411

The information below is about HL_3RG5_006

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_04259.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4WOI|1|DA|G|378
4WOI|1|DA|C|379
4WOI|1|DA|G|380
4WOI|1|DA|C|381
4WOI|1|DA|A|382
4WOI|1|DA|A|383
4WOI|1|DA|G|384
4WOI|1|DA|C|385

Current chains

Chain DA

16S ribosomal RNA

Nearby chains

Chain DP

30S ribosomal protein S16