HL_4WPO_005

3D structure

PDB id

4WPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

4WPO|1|AA|A|185

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WPO_005 not in the Motif Atlas

Geometric match to HL_7RQB_006

Geometric discrepancy: 0.0475

The information below is about HL_7RQB_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06192.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

14

Unit IDs

4WPO|1|AA|G|183
4WPO|1|AA|A|184
4WPO|1|AA|A|185
4WPO|1|AA|A|186
4WPO|1|AA|C|187
4WPO|1|AA|A|188
4WPO|1|AA|U|189
4WPO|1|AA|C|190

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain A1

50S ribosomal protein L28

Chain AP

50S ribosomal protein L15