HL_4WPO_054

3D structure

PDB id

4WPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGACGGAAAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WPO_054 not in the Motif Atlas

Homologous match to HL_7RQB_055

Geometric discrepancy: 0.0879

The information below is about HL_7RQB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.3

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

4WPO|1|AA|G|2315
4WPO|1|AA|G|2316
4WPO|1|AA|A|2317
4WPO|1|AA|C|2318
4WPO|1|AA|G|2319
4WPO|1|AA|G|2320
4WPO|1|AA|A|2321
4WPO|1|AA|A|2322
4WPO|1|AA|A|2323
4WPO|1|AA|U|2324
4WPO|1|AA|C|2325

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AB

5S ribosomal RNA; 5S rRNA

Chain AG

50S ribosomal protein L5