HL_4WPO_055

3D structure

PDB id

4WPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGCAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WPO_055 not in the Motif Atlas

Homologous match to HL_7RQB_056

Geometric discrepancy: 0.0462

The information below is about HL_7RQB_056

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_12078.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

4WPO|1|AA|C|2336
4WPO|1|AA|G|2337
4WPO|1|AA|C|2338
4WPO|1|AA|A|2339
4WPO|1|AA|A|2340
4WPO|1|AA|G|2341
4WPO|1|AA|G|2342
4WPO|1|AA|G|2343

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain A0

50S ribosomal protein L27

Chain AG

50S ribosomal protein L5

Chain AQ

50S ribosomal protein L16

Chain BX

Transfer RNA; tRNA