HL_4WPO_108
3D structure
- PDB id
- 4WPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- G(5MU)(PSU)CAAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MU, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4WPO_108 not in the Motif Atlas
- Homologous match to HL_5E81_213
- Geometric discrepancy: 0.1006
- The information below is about HL_5E81_213
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.9
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
4WPO|1|BX|G|53
4WPO|1|BX|5MU|54
4WPO|1|BX|PSU|55
4WPO|1|BX|C|56
4WPO|1|BX|A|57
4WPO|1|BX|A|58
4WPO|1|BX|A|59
4WPO|1|BX|U|60
4WPO|1|BX|C|61
Current chains
- Chain BX
- P-site tRNA
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain AG
- 50S ribosomal protein L5
- Chain AQ
- 50S ribosomal protein L16
Coloring options: