HL_4WPO_161

3D structure

PDB id

4WPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

4WPO|1|CA|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WPO_161 not in the Motif Atlas

Homologous match to HL_7RQB_049

Geometric discrepancy: 0.0669

The information below is about HL_7RQB_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51824.1

Basepair signature

cWW-F-F-tSH-F-F

Number of instances in this motif group

8

Unit IDs

4WPO|1|CA|G|1949
4WPO|1|CA|G|1950
4WPO|1|CA|U|1951
4WPO|1|CA|A|1952
4WPO|1|CA|A|1953
4WPO|1|CA|G|1954
4WPO|1|CA|U|1955
4WPO|1|CA|U|1956
4WPO|1|CA|C|1957

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain CO

50S ribosomal protein L14

Chain DA

Small subunit ribosomal RNA; SSU rRNA

Chain DW

Transfer RNA; tRNA