HL_4WQ1_045

3D structure

PDB id

4WQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGACCACC

Length

8 nucleotides

Bulged bases

4WQ1|1|14|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WQ1_045 not in the Motif Atlas

Homologous match to HL_7RQB_014

Geometric discrepancy: 0.0808

The information below is about HL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_96598.1

Basepair signature

cWW

Number of instances in this motif group

15

Unit IDs

4WQ1|1|14|G|410
4WQ1|1|14|G|411
4WQ1|1|14|A|412
4WQ1|1|14|C|413
4WQ1|1|14|C|414
4WQ1|1|14|A|415
4WQ1|1|14|C|416
4WQ1|1|14|C|417

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 35

50S ribosomal protein L15

Chain F5

50S ribosomal protein L28