HL_4WQ1_052

3D structure

PDB id

4WQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAACAG

Length

7 nucleotides

Bulged bases

4WQ1|1|14|C|645

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WQ1_052 not in the Motif Atlas

Homologous match to HL_7RQB_021

Geometric discrepancy: 0.2366

The information below is about HL_7RQB_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

4WQ1|1|14|C|641
4WQ1|1|14|G|642
4WQ1|1|14|A|643
4WQ1|1|14|A|644
4WQ1|1|14|C|645
4WQ1|1|14|A|646
4WQ1|1|14|G|647

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain K5

50S ribosomal protein L33

Chain M5

50S ribosomal protein L35