HL_4WQ1_112

3D structure

PDB id

4WQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WQ1_112 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.0886

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4WQ1|1|1G|C|320
4WQ1|1|1G|A|321
4WQ1|1|1G|C|322
4WQ1|1|1G|U|323
4WQ1|1|1G|G|324
4WQ1|1|1G|A|325
4WQ1|1|1G|G|326
4WQ1|1|1G|A|327
4WQ1|1|1G|C|328
4WQ1|1|1G|A|329
4WQ1|1|1G|C|330
4WQ1|1|1G|G|331
4WQ1|1|1G|G|332
4WQ1|1|1G|G|333

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 7A

30S ribosomal protein S16

Chain BA

30S ribosomal protein S20