HL_4WQ1_148

3D structure

PDB id

4WQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUGAAAGCC

Length

9 nucleotides

Bulged bases

4WQ1|1|1H|G|329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WQ1_148 not in the Motif Atlas

Homologous match to HL_7RQB_012

Geometric discrepancy: 0.0722

The information below is about HL_7RQB_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.9

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

19

Unit IDs

4WQ1|1|1H|G|327
4WQ1|1|1H|U|328
4WQ1|1|1H|G|329
4WQ1|1|1H|A|330
4WQ1|1|1H|A|331
4WQ1|1|1H|A|332
4WQ1|1|1H|G|333
4WQ1|1|1H|C|334
4WQ1|1|1H|C|335

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 31

50S ribosomal protein L4

Chain G8

50S ribosomal protein L24