HL_4WQ1_169

3D structure

PDB id

4WQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WQ1_169 not in the Motif Atlas

Homologous match to HL_7RQB_032

Geometric discrepancy: 0.0701

The information below is about HL_7RQB_032

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

4WQ1|1|1H|C|1223
4WQ1|1|1H|G|1224
4WQ1|1|1H|C|1225
4WQ1|1|1H|G|1226
4WQ1|1|1H|A|1227
4WQ1|1|1H|G|1228

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain C8

50S ribosomal protein L20

Chain D8

50S ribosomal protein L21