HL_4WQ1_178

3D structure

PDB id

4WQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

4WQ1|1|1H|A|1614, 4WQ1|1|1H|A|1616, 4WQ1|1|1H|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WQ1_178 not in the Motif Atlas

Homologous match to HL_7RQB_040

Geometric discrepancy: 0.0918

The information below is about HL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

4WQ1|1|1H|C|1612
4WQ1|1|1H|G|1613
4WQ1|1|1H|A|1614
4WQ1|1|1H|C|1615
4WQ1|1|1H|A|1616
4WQ1|1|1H|C|1617
4WQ1|1|1H|A|1618
4WQ1|1|1H|G|1619

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain E8

50S ribosomal protein L22

Chain P8

50S ribosomal protein L34