HL_4WQ1_205

3D structure

PDB id

4WQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCGUCAAGC

Length

9 nucleotides

Bulged bases

4WQ1|1|1H|U|2797

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WQ1_205 not in the Motif Atlas

Homologous match to HL_5J7L_200

Geometric discrepancy: 0.4844

The information below is about HL_5J7L_200

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

4WQ1|1|1H|G|2793
4WQ1|1|1H|C|2794
4WQ1|1|1H|G|2795
4WQ1|1|1H|U|2797
4WQ1|1|1H|C|2798
4WQ1|1|1H|A|2799
4WQ1|1|1H|A|2801
4WQ1|1|1H|G|2802
4WQ1|1|1H|C|2803

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains